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Genomic studies of drought tolerance mechanisms of a typical plant in Heihe basin - dataset II (2014-2015)

一. Data overview This data interchange is the second data interchange of "genomics research on drought tolerance mechanism of typical desert plants in heihe basin", a key project of the major research program of "integrated research on eco-hydrological processes in heihe basin".The main research goal of this project is a typical desert sand Holly plants as materials, using the current international advanced a new generation of gene sequencing technology to the whole genome sequence and gene transcription of Holly group sequence decoding, so as to explore related to drought resistance gene and gene groups, and transgenic technology in model plants such as arabidopsis and rice) verify its drought resistance. 二, data content 1.Sequencing of the genome and transcriptome of lycophylla SPP. The genome size of Mongolian Holly was about 926 Mb, GC content 36.88%, repeat sequence proportion 66%, genome heterozygosity rate 0.56%, which indicated that the genome has many repeat sequences, high heterozygosity and belongs to a complex genome.Based on the predicted sequence results, we subsequently carried out in-depth sequencing of the genome of lysiopsis SPP. The obtained data were assembled to obtain a 937 Mb genome sequence (table 1), which was basically the same as the predicted genome size.Through to the sand Holly transcriptome sequencing and sequence assembly (table 2), received more than 77000 genes coding sequence (Unigene), these sequences are comments found that most of the gene sequence and legumes and soybean, garbanzo beans and bean has a higher similarity (figure 1), consistent with the fact of sand ilex leguminous plants. 一), and the sand Holly is a leguminous plants consistent with the fact. 2.Discovery of simple repeat sequence (SSR) molecular markers of sand Holly: There is a transcriptome data set of sand Holly in the network public database, and the sample collection site is zhongwei city, ningxia.But this is the location of the project team samples in minqin county, gansu province, in order to study whether this sand in different areas of the Holly sequence has sequence polymorphism, we first identify the minqin county plant samples in the genomes of simple sequence repeat (SSR) markers (table 3), and then, compares the transcriptome sequences of plant sample, found in part of SSR molecular marker polymorphism (table 4), these molecular markers could be used for the species of plant genetic map construction, QTL mapping and genetic diversity analysis in the study. 三, data processing instructions Sample collection place: minqin county, gansu province, latitude and longitude: N38 ° 34 '25.93 "E103 ° 08' 36.77".Genome sequencing: a total of 8 genomic DNA libraries of different sizes were constructed and determined by Illumina HiSeq 2500 instrument.Transcriptome sequencing: a library of 24 transcriptome mrnas was constructed and determined by Illumina HiSeq 4000. 四, the use of data and meaning We selected a typical desert plant as the research object, from the Angle of genomics, parse the desert plant genome and transcriptome sequences, excavated its precious drought-resistant gene resources, and to study their drought resistance mechanism of favorable sand Holly this ancient and important to the utilization of plant resources, as well as the heihe river basin of drought-resistant plant genetic breeding, ecological restoration and sustainable development.

2020-07-29

Water resources improvement plan of Shiyang River Basin

"Coupling and Evolution of Hydrologic -Ecologic-Economic Processes of the Heihe River Basin Under the Framework of Water Rights" (91125018) Project data collection 1 - SWater Resources Improvement Plan of Shiyang River Basin 1. Data Overview:The improvement plan of Shiyang River Basin was implemented in 2007 for river basin comparison. 2. Data Content: The released plan.

2020-07-28

Meteorological data of the integrated observation and research station of Ngari for desert environment (2009-2017)

The data set includes meteorological data from the Ngari Desert Observation and Research Station from 2009 to 2017. It includes the following basic meteorological parameters: temperature (1.5 m from the ground, once every half hour, unit: Celsius), relative humidity (1.5 m from the ground, once every half hour, unit: %), wind speed (1.5 m from the ground, once every half hour, unit: m/s), wind direction (1.5 m from the ground, once every half hour, unit: degrees), atmospheric pressure (1.5 m from the ground, once every half hour, unit: hPa), precipitation (once every 24 hours, unit: mm), water vapour pressure (unit: kPa), evaporation (unit: mm), downward shortwave radiation (unit: W/m2), upward shortwave radiation (unit: W/m2), downward longwave radiation (unit: W/m2), upward longwave radiation (unit: W/m2), net radiation (unit: W/m2), surface albedo (unit: %). The temporal resolution of the data is one day. The data were directly downloaded from the Ngari automatic weather station. The precipitation data represent daily precipitation measured by the automatic rain and snow gauge and corrected based on manual observations. The other observation data are the daily mean value of the measurements taken every half hour. Instrument models of different observations: temperature and humidity: HMP45C air temperature and humidity probe; precipitation: T200-B rain and snow gauge sensor; wind speed and direction: Vaisala 05013 wind speed and direction sensor; net radiation: Kipp Zonen NR01 net radiation sensor; atmospheric pressure: Vaisala PTB210 atmospheric pressure sensor; collector model: CR 1000; acquisition interval: 30 minutes. The data table is processed and quality controlled by a particular person based on observation records. Observations and data acquisition are carried out in strict accordance with the instrument operating specifications, and some data with obvious errors are removed when processing the data table.

2020-06-24

Data of interaction mechanism between major road projects and environment in western mountainous areas project

The interaction mechanism project between major road projects and the environment in western mountainous areas belongs to the major research plan of "Environment and Ecological Science in Western China" of the National Natural Science Foundation. The person in charge is Cui Peng researcher of Chengdu Mountain Disaster and Environment Research Institute, Ministry of Water Resources, Chinese Academy of Sciences. The project runs from January 2003 to December 2005. Data collected for this project: Engineering and Environmental Centrifugal Model Test Data (word Document): Consists of six groups of centrifugal model test data, namely: Test 1. Centrifugal Model Test of Soil Cutting High Slope (6 Groups) Test 2. Centrifugal Model Experiment of Backpressure for Slope Cutting and Filling (4 Groups) Test 3. Centrifugal Model Experimental Study on Anti-slide Piles and Pile-slab Walls (10 Groups) Test 4. Centrifugal Model Tests for Different Construction Timing of Slope (5 Groups) Test 5. Migration Effect Centrifugal Model Test (11 Groups) Test 6. Centrifugal Model Test of Water Effect on Temporary Slope (8 Groups) The purpose, theoretical basis, test design, test results and other information of each test are introduced in detail.

2020-06-09

1:1 million wetland data of Shanxi Province

The data is clipped from "1: 1 million wetland data of China". "1: 1 million wetland data of China" mainly reflects the national marsh wetland information in the 2000s. It is expressed in geographic coordinates using the decimal degree. The main contents include: marsh wetland types, wetland water supply types, soil types, main vegetation types, geographical area, etc. Implemented the "Standard for Information Classification and Coding of Sustainable Development Information Sharing System of China". Data source of this database: 1:20 swamp map (internal version), Tibetan Plateau 1: 500,000 swamp map (internal version), swamp survey data 1: 1 million and national 1: 4 million swamp map; processing steps are: data source selection, preprocessing, digitization and encoding of marsh wetland elements, data editing processing, establishing topological relationships, edge processing, projection conversion, linking with attribute databases such as place names and obtaining attribute data.

2020-06-08

1:100000 desert distribution dataset of Shule river basin (2000)

Shule River Basin is one of the three inland river basins in Hexi corridor. In recent years, with the obvious change of climate and the aggravation of human activities, the shortage of water resources and the problem of ecological environment in Shule River Basin have become increasingly prominent. It is of great significance to study the runoff change of Shule River Basin in the future climate situation for making rational water resources planning and ecological environment protection. The Shule River basin boundary is cut from "China's 1:100000 desert sand data set". Taking the 2000 TM image as the data source, it interprets, extracts, revises, and uses remote sensing and geographic information system technology to combine with the 1:100000 scale mapping requirements to carry out thematic mapping of desert, sand and gravel gobi. Data attribute table: Area (area), perimeter (perimeter), ash_ (sequence code), class (desert code), ash_id (desert code). The desert code is as follows: mobile sand 2341010, semi mobile sand 2341020, semi fixed sand 2341030, Gobi 2342000, salt alkali land 2343000. Collect and sort out the basic, meteorological, topographical and geomorphic data of Shule River Basin, and provide data support for the management of Shule River Basin.

2020-06-04

The investigation data on the ground and underground biomass and distribution characteristics of the desert plant communities (2014)

In the previous project, three different types of desert investigation and observation sites in the lower reaches of Heihe River were set up. Different kinds of desert plants with the same average growth and size as the observation site were selected for the above ground biomass and underground biomass total root survey. The dry weight was the dry weight at 80 ℃, and the root shoot ratio was the dry weight ratio of the underground biomass to the aboveground biomass. Species: Elaeagnus angustifolia, red sand, black fruit wolfberry, bubble thorn, bitter beans, Peganum, Tamarix and so on.

2020-06-01

Vulnerability forecast scenarios dataset of the water resources, agriculture, and ecosystem of the Heihe River Basin (Version 1.0) (2010-2050)

By applying Supply-demand Balance Analysis, the water resource supply and demand of the whole river basin and each county or district were calculated, based on which the vulnerability of the water resources system of the basin was evaluated. The IPAT equation was used to set a future water resource demand scenario, setting variables such as future population growth rate, economic growth rate, and unit GDP water consumption to establish the scenario. By taking 2005 as the base year and using assorted forecasting data of population size and economic scale, the future water demand scenarios of various counties and cities from 2010 to 2050 were forecast. By applying the basic structure of the HBV conceptual hydrological model of the Swedish Hydrometeorological Institute, a model of the variation tendency of the basin under climate change was designed. The glacial melting scenario was used as the model input to construct the runoff scenario under climate change. According to the national regulations of the water resources allocation of the basin, a water distribution plan was set up to calculate the water supply comprehensively. Considering of the supply and demand situation, the water resource system vulnerability was evaluated by the water shortage rate. By calculating the (grain production) land pressure index of the major counties and cities in the basin, the balance of supply and demand of land resources under the climate change, glacial melt and population growth scenarios was analyzed, and the vulnerability of the agricultural system was evaluated. The Miami formula and HANPP model were used to calculate the human appropriation of net primary biomass and primary biomass in the major counties and cities for the future, and the vulnerability of ecosystems from the perspective of supply and demand balance was assessed.

2020-04-28

Dataset of vegetation regulation mechanism of soil water cycle in arid desert area (2002-2005)

The vegetation regulation mechanism project of soil water cycle in arid desert areas belongs to the national natural science foundation "environment and ecological science in western China" major research plan, led by li xinrong, a researcher of the institute of environment and engineering in dry and cold areas, Chinese academy of sciences, with the running time of 2003.1-2005.12. Remittance data of the project: 1. Dataset of observation field of shapotou railway vegetation sand fixation protection system (excel) Plant and soil information in the vegetation-sand fixation zone established in 1956, 1964, 1981 and 1987.Since the establishment of the observation field, long-term soil moisture and vegetation surveys have been conducted. This database records the soil moisture data after the neutron tube installation in August 2002, the vegetation data from 2003 to 2005 (vegetation structure, herb structure, shrub structure, etc.), and the soil physical and chemical properties data (particle size, total N,P2O5,K2O, hydrolyzed N) of the irregular surveys. 2. Physiological data set of desert plant stress (excel) From 2003 to 2005, the physiological and biochemical characteristics of typical plant communities and their dominant species in steppe desert under natural and simulated environmental conditions were analyzed.(including photosynthetic transpiration, fluorescence, biochemistry and other indicators) 3. Soil infiltration and evapotranspiration data set (excel) Precipitation infiltration process, soil water dynamics and evapotranspiration of fixed sand dunes monitored by desert artificial vegetation using TDR and Lysimeters from 2002 to 2005. 4. Data set of comprehensive survey on soil and vegetation in the southeastern margin of tengger desert (excel) In 2003-2004, silver (sichuan), yan (latour) highway, silver (sichuan) (state) highway through the tengger desert area, set up along the road of eight samples, 449 samples of soil conductivity, Ph, organic matter, total nitrogen (content) and vegetation (plants, coverage, average height, biomass, strains, coverage, high average, biomass).

2020-04-04

1: 1 million wetland data of Jiangsu Province

The data is clipped from "1: 1 million wetland data of China". "1: 1 million wetland data of China" mainly reflects the national marsh wetland information in the 2000s. It is expressed in geographic coordinates using the decimal degree. The main contents include: marsh wetland types, wetland water supply types, soil types, main vegetation types, geographical area, etc. Implemented the "Standard for Information Classification and Coding of Sustainable Development Information Sharing System of China". Data source of this database: 1:20 swamp map (internal version), Tibetan Plateau 1: 500,000 swamp map (internal version), swamp survey data 1: 1 million and national 1: 4 million swamp map; processing steps are: data source selection, preprocessing, digitization and encoding of marsh wetland elements, data editing processing, establishing topological relationships, edge processing, projection conversion, linking with attribute databases such as place names and obtaining attribute data.

2020-03-31